SNP Profiles matching COCA 3348 /52 [CHA]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	CC	GG	TT	AG	AC	CG	AA	TT	AA	GG	AA	CC
1._GC-01-010-1-10	TT	CC	CC	GG	TT	AG	AC	CG	AA	TT	AA	GG	AA	CC
2._GC-01-010-1-10	TT	CC	CC	GG	TT	AG	AC	CG	AA	TT	AA	GG	AA	CC
3._GC-01-010-1-10	TT	CC	CC	GG	TT	AG	AC	CG	AA	TT	AA	GG	AA	CC
4._GC-01-010-1-10	TT	CC	CC	GG	TT	AG	AC	CG	AA	TT	AA	GG	AA	CC
5._GC-01-010-1-10	TT	CC	CC	GG	TT	AG	AC	CG	AA	TT	AA	GG	AA	CC
6._GC-01-010-1-10	TT	CC	CC	GG	TT	AG	AC	CG	AA	TT	AA	GG	AA	CC
7._GC-01-010-1-10	TT	CC	CC	GG	TT	AG	AC	CG	AA	TT	AA	GG	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	CT	GT	CG	AC	CC	CC	TT	GG	GG	TT	CC	CC
1._GC-01-010-1-10	AG	CC	CT	GT	GG	AC	CC	CC	CC	GG	GG	TT	CC	CC
2._GC-01-010-1-10	AG	CC	CT	GT	GG	AC	CC	CC	CC	GG	GG	TT	CC	CC
3._GC-01-010-1-10	AG	CC	CT	GT	GG	AC	CC	CC	CC	GG	GG	TT	CC	CC
4._GC-01-010-1-10	AG	CC	CT	GT	GG	AC	CC	CC	CC	GG	GG	TT	CC	CC
5._GC-01-010-1-10	AG	CC	CT	GT	GG	AC	CC	CC	CC	GG	GG	TT	CC	CC
6._GC-01-010-1-10	AG	CC	CT	GT	GG	AC	CC	CC	CC	GG	GG	TT	CC	CC
7._GC-01-010-1-10	AG	CC	CT	GT	GG	AC	CC	_	CC	GG	GG	TT	CC	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AA	CC	CC	GT	GG	AT	GG	TT	CC	TT	GG	AG
1._GC-01-010-1-10	CC	CC	AA	CC	CC	GT	GG	AT	GG	TT	CC	TT	GG	AG
2._GC-01-010-1-10	CC	CC	AA	CC	CC	GT	GG	AT	GG	TT	CC	TT	GG	AG
3._GC-01-010-1-10	CC	CC	AA	CC	CC	GT	GG	AT	GG	TT	CC	TT	GG	AG
4._GC-01-010-1-10	CC	CC	AA	CC	CC	GT	GG	AT	GG	TT	CC	TT	GG	AG
5._GC-01-010-1-10	CC	CC	AA	CC	CC	GT	GG	AT	GG	TT	CC	TT	GG	AG
6._GC-01-010-1-10	CC	CC	AA	CC	CC	GT	GG	AT	GG	TT	CC	TT	GG	AG
7._GC-01-010-1-10	CC	CC	AA	CC	CC	GT	GG	AT	GG	TT	CC	TT	GG	AG

Input profile: COCA_3348_/52_[CHA] RUQ_141

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

Mars, 2018

2._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

Mars, 2018

3._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

Mars, 2018

4._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

Mars, 2018

5._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

Mars, 2018

6._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

Mars, 2018

7._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

Mars, 2018

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484

SNP Profiles matching COCA 3348 /52 [CHA]

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Input profile: COCA_3348_/52_[CHA] RUQ_141

1._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 % 42 shared markers

2._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 % 42 shared markers

3._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 % 42 shared markers

4._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 % 42 shared markers

5._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 % 42 shared markers

6._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.4 % 42 shared markers

7._SAN_MIGUEL_3360_/3_[CHA] GC-01-010-1-10

96.3 % 41 shared markers

96.4 %
42 shared markers

96.4 %
42 shared markers

96.4 %
42 shared markers

96.4 %
42 shared markers

96.4 %
42 shared markers

96.4 %
42 shared markers

96.3 %
41 shared markers